Expanding the DNA-probe toolbox for molecular profiling of tissues and their microbiomes
Spatial transcriptomics, a powerful technique that merges sequencing and spatial data, offers unprecedented resolution for studying gene expression within tissues. This study focuses on developing a pipeline to design probes for Multiplexed Error-Robust Fluorescence In Situ Hybridisation (MERFISH) experiments to investigate the spatial distribution of the lung microbiome. Metagenomic data analysis