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Black Queen Evolution and Trophic Interactions Determine Plasmid Survival after the Disruption of the Conjugation Network

Mobile genetic elements such as conjugative plasmids are responsible for antibiotic resistance phenotypes in many bacterial pathogens. The ability to conjugate, the presence of antibiotics, and ecological interactions all have a notable role in the persistence of plasmids in bacterial populations. Here, we set out to investigate the contribution of these factors when the conjugation network was di

Construction and Characterization of Synthetic Bacterial Community for Experimental Ecology and Evolution

Experimental microbial ecology and evolution have yielded foundational insights into ecological and evolutionary processes using simple microcosm setups and phenotypic assays with one- or two-species model systems. The fields are now increasingly incorporating more complex systems and exploration of the molecular basis of observations. For this purpose, simplified, manageable and well-defined mult

Dual-stressor selection alters eco-evolutionary dynamics in experimental communities

Recognizing when and how rapid evolution drives ecological change is fundamental for our understanding of almost all ecological and evolutionary processes such as community assembly, genetic diversification and the stability of communities and ecosystems. Generally, rapid evolutionary change is driven through selection on genetic variation and is affected by evolutionary constraints, such as trade

Effect of mutation supply on population dynamics and trait evolution in an experimental microbial community

Mutation supply can influence evolutionary and thereby ecological dynamics in important ways which have received little attention. Mutation supply influences features of population genetics, such as the pool of adaptive mutations, evolutionary pathways and importance of processes, such as clonal interference. The resultant trait evolutionary dynamics, in turn, can alter population size and species

Ecology determines how low antibiotic concentration impacts community composition and horizontal transfer of resistance genes

Low concentrations of antibiotics have numerous effects on bacteria. However, it is unknown whether ecological factors such as trophic interactions and spatial structuring influence the effects of low concentrations of antibiotics on multispecies microbial communities. Here, we address this question by investigating the effects of low antibiotic concentration on community composition and horizonta

Contrasting the impact of cytotoxic and cytostatic drug therapies on tumour progression

A tumour grows when the total division (birth) rate of its cells exceeds their total mortality (death) rate. The capability for uncontrolled growth within the host tissue is acquired via the accumulation of driver mutations which enable the tumour to progress through various hallmarks of cancer. We present a mathematical model of the penultimate stage in such a progression. We assume the tumour ha

Drug-induced resistance evolution necessitates less aggressive treatment

Increasing body of experimental evidence suggests that anticancer and antimicrobial therapies may themselves promote the acquisition of drug resistance by increasing mutability. The successful control of evolving populations requires that such biological costs of control are identified, quantified and included to the evolutionarily informed treatment protocol. Here we identify, characterise and ex

Biological units of antimicrobial resistance and strategies for their containment in animal production

The increasing prevalence of antimicrobial-resistant bacterial infections has ushered in a major global public health crisis. Judicious or restricted antimicrobial use in animal agriculture, aiming to confine the use for the treatment of infections, is the most commonly proposed solution to reduce selection pressure for resistant bacterial strains and resistance genes. However, a multifaceted solu

Effects of phenotypic variation on consumer coexistence and prey community structure

A popular idea in ecology is that trait variation among individuals from the same species may promote the coexistence of competing species. However, theoretical and empirical tests of this idea have yielded inconsistent findings. We manipulated intraspecific trait diversity in a ciliate competing with a nematode for bacterial prey in experimental microcosms. We found that intraspecific trait varia

The Interplay of Climate Change, Urbanisation, and Species Traits Shapes European Butterfly Population Trends

ABSTRACT Aim To examine how butterfly population trends respond to climate change and urbanisation at a continental scale, and whether responses differ between urban and rural environments. Location 869 sites across 12 European countries, spanning six bioclimatic zones. Time Period 1976?2021. Major Taxa Studied Butterflies (Lepidoptera). Methods We analysed long-term monitoring data from >?8400 po

Search for a light charged Higgs boson in t→H±b decays, with H±→cs, in pp collisions at s=13TeV with the ATLAS detector

A search for a light charged Higgs boson produced in decays of the top quark, t→H±b with H±→cs, is presented. This search targets the production of top-quark pairs tt¯→WbH±b, with W→ℓν (ℓ=e,μ), resulting in a lepton-plus-jets final state characterised by an isolated electron or muon and at least four jets. The search exploits b-quark and c-quark identification techniques as well as multivariate me

Biogeografisk uppföljning 2024 av fjärilar inom habitatdirektivet

Rapporten sammanfattar fjärilsinventeringar utförda 2024 inom Biogeografisk uppföljning som drivs av Naturvårdsverket. I fjällområdet inventerades totalt 35 ytor. Sammanlagt noterades 33 högnordiska blåvingar på 11 av 16 inventerade ytor, 36 dvärgpärlemorfjärilar på 12 av 18 ytor och 13 fjällsilversmygare på 4 inventerade ytor. Svartfläckig blåvinge observerades på 26 av 49 inventerade lokaler. To

EU Grassland Butterfly Index 1991-2024 Technical report

Butterflies have been systematically monitored in Europe for several decades using standard protocols that are now adopted in over 30 countries. Butterflies are ideal biological indicators: they are well-documented, measurable, sensitive to environmental change, occur in a wide range of habitat types, represent many other insects, and are popular with the public because of their beauty. Records fr

The need to implement FAIR principles in biomolecular simulations

In the Big Data era, a change of paradigm in the use of molecular dynamics is required. Trajectories should be stored under FAIR (findable, accessible, interoperable and reusable) requirements to favor its reuse by the community under an open science paradigm. © The Author(s), under exclusive licence to Springer Nature America, Inc. 2025.

Genomic evolution of bacterial populations under coselection by antibiotics and phage

Bacteria live in dynamic systems where selection pressures can alter rapidly, forcing adaptation to the prevailing conditions. In particular, bacteriophages and antibiotics of anthropogenic origin are major bacterial stressors in many environments. We previously observed that populations of the bacterium Pseudomonas fluorescens SBW25 exposed to the lytic bacteriophage SBW25Φ2 and a noninhibitive c

Evolving interactions between diazotrophic cyanobacterium and phage mediate nitrogen release and host competitive ability

Interactions between nitrogen-fixing (i.e. diazotrophic) cyanobacteria and their viruses, cyanophages, can have large-scale ecosystem effects. These effects are mediated by temporal alterations in nutrient availability in aquatic systems owing to the release of nitrogen and carbon sources from cells lysed by phages, as well as by ecologically important changes in the diversity and fitness of cyano

Host range of antibiotic resistance genes in wastewater treatment plant influent and effluent

Wastewater treatment plants (WWTPs) collect wastewater from various sources for a multi-step treatment process. By mixing a large variety of bacteria and promoting their proximity, WWTPs constitute potential hotspots for the emergence of antibiotic resistant bacteria. Concerns have been expressed regarding the potential of WWTPs to spread antibiotic resistance genes (ARGs) from environmental reser

Evolution in interacting species alters predator life-history traits, behaviour and morphology in experimental microbial communities

Predator-prey interactions heavily influence the dynamics of many ecosystems. An increasing body of evidence suggests that rapid evolution and coevolution can alter these interactions, with important ecological implications, by acting on traits determining fitness, including reproduction, anti-predatory defence and foraging efficiency. However, most studies to date have focused only on evolution i

Localized coevolution between microbial predator and prey alters community-wide gene expression and ecosystem function

Closely interacting microbial species pairs (e.g., predator and prey) can become coadapted via reciprocal natural selection. A fundamental challenge in evolutionary ecology is to untangle how coevolution in small species groups affects and is affected by biotic interactions in diverse communities. We conducted an experiment with a synthetic 30-species bacterial community where we experimentally ma